Publications

Google Scholar profile

This page lists selected publications and a full publication list. For the most up-to-date record, please also see my Google Scholar profile.

$ denotes equal contributions; ^ denotes corresponding author(s)

Selected Publications

• Xiong, X.^$, Liu, Y.^$, Pu, D., Yang, Z., Bi, Z., Tian, L.^{^}, and Li, X.^{^} (2024). DeSide: A unified deep learning approach for cellular deconvolution of tumor microenvironment. Proc. Natl. Acad. Sci. U. S. A., 121, e2407096121. Article, GitHub

• Zhou, Z., Luo, M., Chen, X., Yin, Y., Xiong, X., Wang, R., and Zhu, Z.-J^{^}. (2020). Ion mobility collision cross-section atlas for known and unknown metabolite annotation in untargeted metabolomics. Nat. Commun. 11, 4334. Article

• Zhou, Z., Xiong, X., and Zhu, Z.-J.^{^} (2017). MetCCS predictor: a web server for predicting collision cross-section values of metabolites in ion mobility-mass spectrometry based metabolomics. Bioinformatics 33, 2235–2237. Article

Full Publication List

• Xiong, X.^$, Liu, Y.^$, Pu, D., Yang, Z., Bi, Z., Tian, L.^{^}, and Li, X.^{^} (2024). DeSide: A unified deep learning approach for cellular deconvolution of tumor microenvironment. Proc. Natl. Acad. Sci. U. S. A., 121, e2407096121. Article, Github

• Zhou, Z., Luo, M., Chen, X., Yin, Y., Xiong, X., Wang, R., and Zhu, Z.-J^{^}. (2020). Ion mobility collision cross-section atlas for known and unknown metabolite annotation in untargeted metabolomics. Nat. Commun. 11, 4334. Article

• Shen, X., Wang, R., Xiong, X., Yin, Y., Cai, Y., Ma, Z., Liu, N., and Zhu, Z.-J^{^}. (2019). Metabolic reaction network-based recursive metabolite annotation for untargeted metabolomics. Nat. Commun. 10, 1516. Article

• Zhou, Z., Shen, X., Chen, X., Tu, J., Xiong, X., and Zhu, Z.J.^{^} (2019). LipidIMMS Analyzer: integrating multi-dimensional information to support lipid identification in ion mobility—mass spectrometry based lipidomics. Bioinformatics 35. Article

• Zhou, Z., Tu, J., Xiong, X., Shen, X., and Zhu, Z.J.^{^} (2017). LipidCCS: prediction of collision cross-section values for lipids with high precision to support ion mobility–mass spectrometry-based lipidomics. Anal. Chem. 89, 9559–9566. Article

• Zhou, Z., Xiong, X., and Zhu, Z.-J.^{^} (2017). MetCCS predictor: a web server for predicting collision cross-section values of metabolites in ion mobility-mass spectrometry based metabolomics. Bioinformatics 33, 2235–2237. Article